Popis radova djelatnika Zavoda za molekularnu biologiju

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  1.  Šimurina M, de Haan N, Vučković F, Kennedy NA, Štambuk J, Falck D, Trbojević-Akmačić I, Clerc F, Razdorov G, Khon A, Latiano A, D’Incà R, Danese S, Targan S, Landers C, Dubinsky , IBD-BIOM consortium, McGovern  DPB, Annese V, Wuhrer M, Lauc G (2018) Glycosylation of immunoglobulin G associates with clinical features of inflammatory bowel diseases. Gastroenterology, DOI: https://doi.org/10.1053/j.gastro.2018.0002  http://www.gastrojournal.org/article/S0016-5085(18)30012-X/pdf
  2. Wardell C.P, Fujita M, Yamada T, Simbolo M, Fassan M, Karlic R, Polak P, Kim J, Hatanaka Y, Maejima K, Lawlor RT, Nakanishi Y, Mitsuhashi T, Fujimoto A, Furuta M, Ruzzenente A, Conci S, Oosawa A, Sasaki-Oku A, Nakano K, Tanaka H, Yamamoto Y, Michiaki K, Kawakami Y, Aikata H, Ueno M, Hayami S, Gotoh, K, Ariizumi S-I, Yamamoto M, Yamaue H, Chayama K, Miyano S, Getz G, Scarpa A, Hirano S, Nakamura T, Nakagawa H. (2018) Genomic characterization of biliary tract cancers identifies driver genes and predisposing mutations. Journal of Hepatology. Netherlands. doi:10.1016/j.jhep.2018.01.009. https://www.sciencedirect.com/science/article/pii/S0168827818300217
  3. Zoldoš V, Biruš I, Muratović E, Šatović Z, Vojta A, Robin O, Pustahija F, Bogunić F, Vičić-Bočkor V, Šiljak-Yakovlev S (2018) Epigenetic differentiation of natural populations of Lilium bosniacum associated with contrasting habitat conditions. Genome Biology and Evolution, 10(1):293-303, https://doi.org/10.1093/gbe/evy010 https://academic.oup.com/gbe/article/10/1/291/4802236
  4. Cvjetko P, Zovko M, Peharec Štefanić P, Biba R, Tkalec M, Domijan A-M, Vinković Vrček I, Letofsky-Papst I, Šikić S, Balen B. Phytotoxic effects of silver nanoparticles in tobacco plants. Environmental Science and Pollution Research. (2018) DOI : 10.1007/s11356-017-0928-8. https://link.springer.com/article/10.1007/s11356-017-0928-8
  5. Madunić, J., Madunić, I. V., Gajski, G., Popić, J., & Garaj-Vrhovac, V. (2018). Apigenin: A dietary flavonoid with diverse anticancer properties. Cancer Letters, 413, 11–22. http://doi.org/10.1016/j.canlet.2017.10.041 https://www.sciencedirect.com/science/article/pii/S030438351730678X
  6. Madunić, J., Horvat, L., Majstorović, I., Jodłowska, I., Antica, M., & Matulić, M. (2017). Sodium Salicylate Inhibits Urokinase Activity in MDA MB-231 Breast Cancer Cells. Clinical Breast Cancer, 17(8), 629–637. http://doi.org/10.1016/j.clbc.2017.03.015https://www.sciencedirect.com/science/article/pii/S1526820917301064
  7. Peric M, Lovric A, Saric A, Musa M, Bou D, Rudan M, Nikolic A, Sobocanec S, Mikecin A-M, Dennerlein S, Milosevic I, Vlahovicek K, Raimundo N, Krisko A. (2017) TORC1-mediated sensing of chaperone activity alters glucose metabolism and extends lifespan. Aging cell. England, 16(5), 994–1005. doi: 10.1111/acel.12623. http://onlinelibrary.wiley.com/doi/10.1111/acel.12623/abstract
  8. Maruvka YE, Mouw KW, Karlic R, Parasuraman P, Kamburov A, Polak P, Haradhvala NJ, Hess JM, Rheinbay E, Brody Y, Koren A, Braunstein LZ, D'Andrea A, Lawrence MS, Bass A, Bernards A, Michor F, Getz G. Analysis of somatic microsatellite indels identifies driver events in human tumors. Nature Biotechnology. (2017) 35(10):951-959. doi: 10.1038/nbt.3966. https://www.nature.com/articles/nbt.3966
  9. Polak P, Kim J, Braunstein L, Karlic R, Haradhavala NJ, Tiao G, Rosebrock , Livitz D, Kübler K, Mouw KW, Kamburov A, Maruvka YE, Leshchiner I, Lander ES, Golub TR, Zick A, Orthwein A, Lawrence MS, Batra RN, Caldas C, Haber DA, Laird PW, Shen H, Ellisen LW, D'Andrea AD, Chanock SJ, Foulkes WD, Getz G. A mutational signature reveals alterations underlying deficient homologous recombination repair in breast cancer. Nature Genetics. 49(10):1476-1486. doi: 10.1038/ng.3934. https://www.nature.com/articles/ng.393
  10. Franke V, Ganesh S, Karlic R, Malik R, Pasulka J, Horvat F, Kuzman M, Fulka H, Cernohorska M, Urbanova J, Svobodova E, Ma J, Suzuki Y, Aoki F, Schultz RM, Vlahovicek K, Svobod, P. Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes. Genome Research. 27 (2017) , 8; 1384-1394. http://genome.cshlp.org/content/early/2017/05/17/gr.216150.116
  11. Karlić R, Ganesh S, Frank V, Svobodova E, Urbanova J, Suzuki Y, Aoki F, Vlahoviček K, Svoboda P. Long non-coding RNA exchange during the oocyte-to-embryo transition in mice. DNA Research. 24 (2017) , 2; 129-141. https://academic.oup.com/dnaresearch/article/24/2/129/2901809
  12. Leščić Ašler I, Peharec Štefanić P, Balen B, Allmaier G, Marchetti- Deschmann M, Kojić-Prodić B. Horseradish esterases: detection, purification and identification. Plant Cell, Tissue and Organ Culture. (2017) 130 (2017) , 1; 13-24. https://link.springer.com/article/10.1007/s11240-017-1200-0
  13. Cvjetko P, Milošić A, Domijan A-M, Vinković Vrček I Tolić S, Peharec Štefanić P Letofsky-Papst I, Tkalec M, Balen B. Toxicity of silver ions and differently coated silver nanoparticles in Allium cepa roots. Ecotoxicology and Environmental Safety. 137 (2017); 18-28; IF 3,743. https://www.sciencedirect.com/science/article/pii/S0147651316304638?via%3Dihu
  14. Markulin D, Vojta A, Samaržija I, Gamulin M, Bečeheli I, Jukić I, Maglov Č, Zoldoš V, Fučić A. (2017) Association between RASSF1A promoter methylation and testicular germ cell tumor: a meta-analysis and cohort study. Cancer Genomics Proteomics, 14(5):363-372. Doi:10.21873/cgp.20046. http://cgp.iiarjournals.org/content/14/5/363.long
  15. Siljak-Yakovlev S, Godelle B, Zoldos V, Vallès J, Garnatje T, Hidalgo O. (2017) Evolutionary implications of heterochromatin and rDNA in chromosome number and genome size during changes in dysploidy: a case study in Reichardia genus. PLoS One, 9;12(8):e0182318. doi: 10.1371/journal.pone. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0182318
  16. Hinneburg H, Korać P, Schirmeister F, Gasparov S, Seeberger PH, Zoldoš V, Kolarich D (2017) Unlocking cancer glycomes form histopathological formalin-fixed and paraffin embedded (FFPE) tissue microdissections. Molecular Cell Proteomics doi:10.1074/mcp.M116.062414  http://www.mcponline.org/content/16/4/524.long
  17. Majsec K, Bhuiyan NH, Sun Q, Kumari S, Kumar V, Ware D, van Wijk KJ. (2017)  The Plastid and Mitochondrial Peptidase Network in Arabidopsis thaliana: A Foundation for Testing Genetic Interactions and Functions in Organellar Proteostasis. Plant Cell29(11):2687-2710. doi: 10.1105/tpc.17.00481.  http://www.plantcell.org/content/early/2017/09/25/tpc.17.00481
  18. Ćuti T, Antunović M, Marijanović , Ivković A, Vukasović A, Matić I, Pećina M, Hudetz D. Capacity of muscle derived stem cells and pericytes to promote tendon graft integration and ligamentization following anterior cruciate ligament reconstruction. International orthopaedics. 41 (2017) , 6; 1189-1198. https://link.springer.com/article/10.1007%2Fs00264-017-3437-y
  19. Rogina A. Antunović M,; Pribolšan L, Caput Mihalić K, Vukasović A, Ivković A, Marijanović I, Gallego Ferrer G, Ivanković M, Ivanković H. Human Mesenchymal Stem Cells Differentiation Regulated by Hydroxyapatite Content within Chitosan-Based Scaffolds under Perfusion Conditions. Polymers. 9 (2017), 9; 387-404 . http://www.mdpi.com/2073-4360/9/9/387
  20. Rogina A, Ressler A, Matić I, Gallego Ferrer G, Marijanović I, Ivanković M, Ivanković  H. Cellular hydrogels based on pH-responsive chitosan-hydroxyapatite system. Carbohydrate polymers. 166 (2017) ; 173-182.  https://www.sciencedirect.com/science/article/pii/S0144861717302436
  21. Marin Radovčić, Tom Killelea, Ekaterina Savitskaya, Lukas Wettstein, Edward L. Bolt, Ivana Ivančić-Baće (2018). CRISPR-Cas adaptation in Escherichia coli requires RecBCD helicase but not nuclease activity, is independent of homologous recombination, and is antagonized by 5′ ssDNA exonucleases. Nucleic Acids Research, gky799. (IF 11.561, rank 10/292 in Biochemistry & Molecular Biology)
  22. Cubbon, Andrew; Ivančić-Baće, Ivana; Bolt, Edward L.CRISPR-Cas Immunity, DNA repair and Genome Stability // Bioscience reports, 38 (2018), 5; 1-10 doi:10.1042/BSR20180457
    https://www.bib.irb.hr/955651